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Registros recuperados: 160
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Estructura poblacional de aislamiento del Citrus Tristeza Closterovirus (CTV) en México y en Brasil Colegio de Postgraduados
Rivas Valencia, Patricia.
La tristeza es causada por un complejo viral constituido por diversos haplotipos (hps) del Citrus tristeza virus (CTV). El objetivo fue realizar un análisis de la estructura poblacional en diferentes escenarios epidémicos: a) En Yucatán, México, en condiciones asintomáticas (As) y con presencia de T. citricida (Tc), vector asociado a aislamientos de tipo severo; y en Tamaulipas en condiciones As y sin Tc. b) En Brasil, en condiciones As y sintomáticas (s), en regiones con y sin muerte súbita de los cítricos (MSC), síndrome atribuible a una nueva variante severa del CTV. Se estudiaron las secuencias génicas p25 y p27 de la capa proteica viral. En México, con SSCP se demostró una estructura poblacional compleja en Tamaulipas, con 7 patrones...
Tipo: Tesis Palavras-chave: SSCP; Muerte súbita de los cítricos; Estructura poblacional; Doctorado; Fitopatología; Citrus sudden death; Population structure.
Ano: 2008 URL: http://hdl.handle.net/10521/1368
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Estructura poblacional de aislamiento del Citrus Tristeza Closterovirus (CTV) en México y en Brasil Colegio de Postgraduados
Rivas Valencia, Patricia.
RESUMEN La tristeza es causada por un complejo viral constituido por diversos haplotipos (hps) del Citrus tristeza virus (CTV). El objetivo fue realizar un análisis de la estructura poblacional en diferentes escenarios epidémicos: a) En Yucatán, México, en condiciones asintomáticas (As) y con presencia de T. citricida (Tc), vector asociado a aislamientos de tipo severo; y en Tamaulipas en condiciones As y sin Tc. b) En Brasil, en condiciones As y sintomáticas (s), en regiones con y sin muerte súbita de los cítricos (MSC), síndrome atribuible a una nueva variante severa del CTV. Se estudiaron las secuencias génicas p25 y p27 de la capa proteica viral. En México, con SSCP se demostró una estructura poblacional compleja en Tamaulipas, con 7...
Tipo: Tesis Palavras-chave: SSCP; Muerte súbita de los cítricos; Estructura poblacional SSCP; Citrus sudden death; Population structure.
Ano: 2012 URL: http://hdl.handle.net/10521/1061
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Estructura morfológica-poblacional de Hintonia latiflora (Rubiaceae) relacionada con el descortezamiento, en la Cuenca Alta del Balsas México. Colegio de Postgraduados
Beltrán Rodríguez, Leonardo Alejandro.
Hintonia latiflora “quina amarilla” habita en el Bosque Tropical Caducifolio, es medicinal por lo que se comercializa la corteza interna. La recolecta es excesiva y las poblaciones están cada vez más distantes y escasas. No se cuenta con información biológica, ecológica y social que permita establecer criterios para la gestión y conservación de la especie, por ello, el presente estudio se desarrolló en Tlalcozotitlán, Guerrero, el sitio de cosecha comercial de quina. Se documentó la historia natural y antropógena de H. latiflora sustentada en la literatura científica y en observaciones de campo; se investigó la estructura poblacional, la influencia de la cosecha de corteza sobre caracteres arquitectónicos, reproductivos y en la densidad, además, se...
Palavras-chave: Quina amarilla; Historia natural; Factores físicos; Estructura poblacional; Corteza medicinal; Gestión comunitaria; Yellow quina; Natural history; Physical factors; Population structure; Medicinal bark; Community management; Botánica; Maestría.
Ano: 2013 URL: http://hdl.handle.net/10521/2183
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Łeghágots'enetę (learning together): the importance of indigenous perspectives in the identification of biological variation Ecology and Society
Polfus, Jean L.; Natural Resources Institute, University of Manitoba, Winnipeg, Manitoba, Canada; jeanpolfus@gmail.com; Manseau, Micheline; Office of the Chief Ecosystem Scientist, Parks Canada, Gatineau, Québec, Canada; Natural Resources Institute, University of Manitoba, Winnipeg, Manitoba, Canada; Micheline.Manseau@pc.gc.ca; Bayha, Walter; Délı̨nę Land Corporation, Délı̨nę, Northwest Territories, Canada; nihtla321@gmail.com; Rice, Keren; Department of Linguistics, University of Toronto, Toronto, Ontario, Canada; rice@chass.utoronto.ca; Wilson, Paul; Biology Department, Trent University, Peterborough, Ontario, Canada; pawilson@trentu.ca.
Tipo: Peer-Reviewed Reports Palavras-chave: Aboriginal; Biocultural diversity; Biodiversity; Caribou; Collaborative research; Ecology; First Nation; Genetic variation; Indigenous communities; Population genetics; Population structure; Rangifer tarandus; Resource management; Social-ecological systems; Traditional knowledge.
Ano: 2016
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Evaluation of genetic diversity and linkage disequilibrium in Korean-bred rice varieties using SSR markers Electron. J. Biotechnol.
Wang,Xiao-Qiang; Kwon,Soon-Wook; Park,Yong-Jin.
Background: In order to evaluate the variation among different rice types, the genetic diversity in a rice collection composed by 59 breeding lines, 23 landraces, 18 weedy rice lines, and 35 introduced lines that collected from countries worldwide was analyzed using 134 simple sequence repeat markers. Results: In total, 1264 alleles were identified (average, 9.43 per locus). Rare alleles made up a large portion (58.4%) of the detected alleles, and 29 unique alleles associated with rice accessions were also discovered. A model-based structural analysis revealed the presence of three subpopulations. The genetic relationships revealed by the neighbour-joining tree method were fairly consistent with the structure-based membership assignments for most of the...
Tipo: Journal article Palavras-chave: Landraces; Linkage disequilibrium; Population structure; Rice; Simple sequence repeats.
Ano: 2013 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582013000500011
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Genetic diversity and population structure analysis of strawberry (Fragaria x ananassa Duch.) using SSR markers Electron. J. Biotechnol.
Yoon,Min-Young; Moe,Kyaw Thu; Kim,Dae-Young; Rho,Il-Rae; Kim,Su; Kim,Ki-Taek; Won,Mi-Kyoung; Chung,Jong-Wook; Park,Yong-Jin.
In total, 18 simple sequence repeat (SSR) markers were used to analyze the genetic diversity and population structure of 59 accessions of cultivated strawberry (Fragaria x ananassa Duch.) from Korea, Germany, United States, United Kingdom, and Japan. In total, 101 alleles were detected with an average of 5.6 per locus and 21 specific alleles were identified. Notably, one genotype (Blonoli from Germany) possessed a maximum of 10 different unique alleles specific to each genotype. The gene diversity varied from 0.027 (EMPaEKO1B) to 0.791 (CFACT110), with an average value of 0.509. PIC values ranged from 0.026 to 0.762 (average 0.454). A model-based structure analysis revealed the presence of two populations. The accessions that were clearly assigned to a...
Tipo: Journal article Palavras-chave: Genetic diversity; Population structure; SSR markers; Strawberry.
Ano: 2012 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582012000200006
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Genetic diversity of Morato's Digger Toad, Proceratophrys moratoi: spatial structure, gene flow, effective size and the need for differential management strategies of populations Genet. Mol. Biol.
Arruda,Mauricio P.; Costa,William P.; Recco-Pimentel,Shirlei M..
Abstract The Morato's Digger Toad, Proceratophrys moratoi, is a critically endangered toad species with a marked population decline in southern Brazilian Cerrado. Despite this, new populations are being discovered, primarily in the northern part of the distribution range, which raises a number of questions with regard to the conservation status of the species. The present study analyzed the genetic diversity of the species based on microsatellite markers. Our findings permitted the identification of two distinct management units. We found profound genetic structuring between the southern populations, on the left margin of the Tietê River, and all other populations. A marked reduction was observed in the contemporary gene flow among the central populations...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Proceratophrys moratoi; Microsatellite; Population structure; Management unit; Conservation.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572017000300502
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Genetics, evolution and conservation of Bromeliaceae Genet. Mol. Biol.
Zanella,Camila M.; Janke,Aline; Palma-Silva,Clarisse; Kaltchuk-Santos,Eliane; Pinheiro,Felipe G.; Paggi,Gecele M.; Soares,Luis E.S.; Goetze,Márcia; Büttow,Miriam V.; Bered,Fernanda.
Bromeliaceae is a morphologically distinctive and ecologically diverse family originating in the New World. Three centers of diversity, 58 genera, and about 3,140 bromeliad species are currently recognized. We compiled all of the studies related to the reproductive biology, genetic diversity, and population structure of the Bromeliaceae, and discuss the evolution and conservation of this family. Bromeliads are preferentially pollinated by vertebrates and show marked variation in breeding systems, from predominant inbreeding to predominant outcrossing, as well as constancy in chromosome number (2n = 2x = 50). Autogamous or mixed mating system bromeliads have a high inbreeding coefficient (F IS), while outcrossing species show low F IS. The degree of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bromeliads; Cytogenetics; Genetic diversity; Population structure; Reproductive biology.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000600017
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Genetic diversity and population structure of the Guinea pig (Cavia porcellus, Rodentia, caviidae) in Colombia Genet. Mol. Biol.
Burgos-Paz,William; Cerón-Muñoz,Mario; Solarte-Portilla,Carlos.
The aim was to establish the genetic diversity and population structure of three guinea pig lines, from seven production zones located in Nariño, southwest Colombia. A total of 384 individuals were genotyped with six microsatellite markers. The measurement of intrapopulation diversity revealed allelic richness ranging from 3.0 to 6.56, and observed heterozygosity (Ho) from 0.33 to 0.60, with a deficit in heterozygous individuals. Although statistically significant (p < 0.05), genetic differentiation between population pairs was found to be low. Genetic distance, as well as clustering of guinea-pig lines and populations, coincided with the historical and geographical distribution of the populations. Likewise, high genetic identity between improved and...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Food security; Microsatellite; Population structure.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572011000400027
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Genetic variability of two populations of Pseudoplatystoma reticulatum from the Upper Paraguay River Basin Genet. Mol. Biol.
Abreu,Marcia Matos de; Pereira,Luiz Henrique Garcia; Vila,Vilma Barretto; Foresti,Fausto; Oliveira,Claudio.
Catfishes of the genus Pseudoplatystoma are very important species due to both their high commercial value and their ecological role as voracious predators. They undertake lengthy migratory movements during their life-cycle, this including reproductive migration which occurs from October to December in the rainy season. In the present study, seven microsatellite loci were analyzed to access genetic variability in two samples of P. reticulatum from the Upper Paraguay Basin. The loci were highly polymorphic (mean = 7.28). According to all analysis, the two samples of P. reticulatum revealed pronounced genetic differentiation. Fst value was 0.2290, Rst value 0.1067 and AMOVA 22.90% (Fst) and 10.67% (Rst), all being highly significant (p < 0.001). The...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Fish; Population genetics; Microsatellite; Homing; Population structure.
Ano: 2009 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572009000400032
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Interethnic admixture and the evolution of Latin American populations Genet. Mol. Biol.
Salzano,Francisco Mauro; Sans,Mónica.
A general introduction to the origins and history of Latin American populations is followed by a systematic review of the data from molecular autosomal assessments of the ethnic/continental (European, African, Amerindian) ancestries for 24 Latin American countries or territories. The data surveyed are of varying quality but provide a general picture of the present constitution of these populations. A brief discussion about the applications of these results (admixture mapping) is also provided. Latin American populations can be viewed as natural experiments for the investigation of unique anthropological and epidemiological issues.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Interethnic admixture; Latin America; Population structure.
Ano: 2014 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000200003
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Mitochondrial DNA phylogeography of Brazilian populations of Drosophila buzzatii Genet. Mol. Biol.
Brito,Reinaldo A. de; Manfrin,Maura H.; Sene,Fabio M..
The Argentinean Chaco region has been considered the center of origin of Drosophila buzzatii in South America because it contains most of the chromosomal polymorphism detected in natural populations. Two hypotheses have been put forward to explain the distribution of D. buzzatii in Brazil, one proposing that it has only recently passively colonized Brazil via human dispersal and the other suggesting that D. buzzatii has actively migrated to Brazil some time ago. Data from chromosomal inversions support recent colonization, whereas data from allozymes and mtDNA variation indicate that D. buzzatii has been in Brazil longer, favoring an active dispersal hypothesis. In our present work we analyzed data on 56 South American flies, mostly from Brazil, sequenced...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Drosophila buzzatii; Population structure; Mitochondrial DNA; Phylogeography; Brazil; Climatic cycles.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572002000200009
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Variation and genetic structure of Melipona quadrifasciata Lepeletier (Hymenoptera, Apidae) populations based on ISSR pattern Genet. Mol. Biol.
Nascimento,Marcília A.; Batalha-Filho,Henrique; Waldschmidt,Ana M.; Tavares,Mara G.; Campos,Lucio A.O.; Salomão,Tânia M.F..
For a study of diversity and genetic structuring in Melipona quadrifasciata, 61 colonies were collected in eight locations in the state of Minas Gerais, Brazil. By means of PCR analysis, 119 ISSR bands were obtained, 80 (68%) being polymorphic. He and H B were 0.20 and 0.16, respectively. Two large groups were obtained by the UPGMA method, one formed by individuals from Januária, Urucuia, Rio Vermelho and Caeté and the other by individuals from São João Del Rei, Barbacena, Ressaquinha and Cristiano Otoni. The Φst and θB values were 0.65 and 0.58, respectively, thereby indicating high population structuring. UPGMA grouping did not reveal genetic structuring of M. quadrifasciata in function of the tergite stripe pattern. The significant correlation between...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Hymenoptera; Melipona; Genetic differentiation; ISSR markers; Population structure.
Ano: 2010 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572010000200031
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Population structure analysis of Pimelodus maculatus (Pisces, Siluriformes) from the Tietê and Paranapanema Rivers (Brazil) Genet. Mol. Biol.
Almeida,Fernanda Simões de; Sodré,Leda Maria Koelblinger; Contel,Eucleia Primo Betioli.
Pimelodus maculatus populations from the Tietê and Paranapanema rivers were sampled and had their genetic structure analyzed by using RAPD markers, with the aim of contributing to future conservation studies. The proportion of polymorphic loci was greater than 50% in the populations of both rivers. Genetic diversity data showed that, in spite of its nine hydroelectric plants, the Tietê river population was genetically homogeneous, whereas the Paranapanema river population was structured. This might be due to the presence of high waterfalls distributed all along its course. These data may serve as indicators for future conservation studies on the Tietê and Paranapanema rivers.
Tipo: Info:eu-repo/semantics/article Palavras-chave: RAPD markers; Population structure; Conservation; Genetic variability; Pimelodus.
Ano: 2003 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572003000300014
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High interpopulation homogeneity in Central Argentina as assessed by Ancestry Informative Markers (AIMs) Genet. Mol. Biol.
García,Angelina; Dermarchi,Darío A.; Tovo-Rodrigues,Luciana; Pauro,Maia; Callegari-Jacques,Sidia M.; Salzano,Francisco M.; Hutz,Mara H..
The population of Argentina has already been studied with regard to several genetic markers, but much more data are needed for the appropriate definition of its genetic profile. This study aimed at investigating the admixture patterns and genetic structure in Central Argentina, using biparental markers and comparing the results with those previously obtained by us with mitochondrial DNA (mtDNA) in the same samples. A total of 521 healthy unrelated individuals living in 13 villages of the Córdoba and San Luis provinces were tested. The individuals were genotyped for ten autosomal ancestry informative markers (AIMs). Allele frequencies were compared with those of African, European and Native American populations, chosen to represent parental contributions....
Tipo: Info:eu-repo/semantics/article Palavras-chave: AIMs; Córdoba; San Luis; Migration; Population structure.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572015000300324
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Population structure and genetic diversity of the giant anteater (Myrmecophaga tridactyla: Myrmecophagidae, Pilosa) in Brazil Genet. Mol. Biol.
Clozato,Camila L.; Miranda,Flávia R.; Lara-Ruiz,Paula; Collevatti,Rosane G.; Santos,Fabrício R..
Abstract The giant anteater (Myrmecophaga tridactyla, Pilosa, Linnaeus 1758) belongs to the mammalian order Pilosa and presents a large distribution along South America, occupying a great variety of habitats. It is listed in the IUCN Red List of threatened species as Vulnerable. Despite threatened, there is a lack of studies regarding its genetic variability. The aim of this study was to examine the genetic diversity and patterns of genetic structure within remaining populations. We analyzed 77 individuals from seven different populations distributed in four biomes across Brazil: Cerrado, Pantanal, Atlantic Forest and Amazon Forest. We sequenced two mitochondrial markers (control region and Cyt-b) and two nuclear markers (AMELY and RAG2). We found high...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Giant Anteater; Xenarthra; Cerrado; Genetic diversity; Population structure.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572017000100050
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Linkage disequilibrium, genetic association mapping and gene localization in crop plants Genet. Mol. Biol.
Sorkheh,Karim; Malysheva-Otto,Lyudmyla V.; Wirthensohn,Michelle G.; Tarkesh-Esfahani,Saeed; Martínez-Gómez,Pedro.
DNA-based molecular markers have been extensively utilized for a variety of studies in both plant and animal systems. One of the major uses of these markers is the construction of genome-wide molecular maps and the genetic analysis of simple and complex traits. However, these studies are generally based on linkage analysis in mapping populations, thus placing serious limitations in using molecular markers for genetic analysis in a variety of plant populations. Therefore, alternative approach has been suggested, linkage disequilibrium-based association analysis which detects and locates quantitative trait loci (QTL) by the strength of the correlation between a trait and a marker. Although association analysis has already been used for studies on genetics of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Linkage disequilibrium; LD; Association mapping; Population structure; QTLs; Localization of genes; Marker-trait associations.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572008000500001
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Population structure of Eupemphix nattereri (Amphibia, Anura, Leiuperidae) from Central Brazil Genet. Mol. Biol.
Silva,Daniela de Melo e; Cruz,Aparecido Divino da; Bastos,Rogério Pereira; Reis,Raquel Loren; Telles,Mariana Pires de Campos; Diniz-Filho,José Alexandre Felizola.
This study reports on 156 specimens of the amphibian Eupemphix nattereri, a widely distributed leiuperid, obtained from 11 municipalities of central Brazil. The extent of genetic variation was quantified by determining the mean number of alleles per locus and the proportion of polymorphic loci. An analysis of molecular variance (AMOVA) was performed on the random amplified polymorphic DNA (RAPD) haplotypes. The genetic distances obtained by calculating pairwise phist among local samples were used to determine population relationships using the unweighted pair-group method (UPGMA) and non-metric multidimensional scaling (NMDS). The cophenetic correlation was calculated to confirm agreement between the genetic matrix and the unweighted pair group method with...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Eupemphix nattereri; Gene flow; Population structure; RAPD markers.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572007000600022
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Factorial analysis of bootstrap variances of population genetic parameter estimates Genet. Mol. Biol.
Carlini-Garcia,Luciana Aparecida; Vencovsky,Roland; Coelho,Alexandre Siqueira Guedes.
We presented an alternative way to verify the relative contribution to the total variance, of the sources of variation due to populations (P), individuals within populations (I), the (P*I) interaction, and the standard error of the following parameter estimates: total (F) and intrapopulation (f) fixation indices, and divergence among populations (q). The knowledge of this relative contribution is important to establish sampling strategies of natural populations. To attain these objectives, the bootstrap method was used to resample simultaneously populations and individuals, considering different combinations of P and I. This procedure was repeated five times for a given combination of each analyzed data set. For each data set, five estimates of these...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Population structure; Resampling; Natural populations.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000200019
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Optimization procedures for establishing reserve networks for biodiversity conservation taking into account population genetic structure Genet. Mol. Biol.
Diniz Filho,José Alexandre Felizola; Telles,Mariana Pires de Campos.
Conservation genetics has been focused on the ecological and evolutionary persistence of targets (species or other intraspecific units), especially when dealing with narrow-ranged species, and no generalized solution regarding the problem of where to concentrate conservation efforts for multiple genetic targets has yet been achieved. Broadly distributed and abundant species allow the identification of evolutionary significant units, management units, phylogeographical units or other spatial patterns in genetic variability, including those generated by effects of habitat fragmentation caused by human activities. However, these genetic units are rarely considered as priority conservation targets in regional conservation planning procedures. In this paper, we...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biodiversity conservation; Population structure; Geographic genetics.
Ano: 2006 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572006000200004
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